Generic analysis for Smith et al. 2014 RNA-Seq polysome-Seq

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WT RNA

 upf1 RNA vs WT RNAWT poly vs WT RNAupf1 poly vs WT RNA
WT RNA vs upf1 RNA

upf1 RNA

 WT poly vs upf1 RNAupf1 poly vs upf1 RNA
WT RNA vs WT polyupf1 RNA vs WT poly

WT poly

 upf1 poly vs WT poly
WT RNA vs upf1 polyupf1 RNA vs upf1 polyWT poly vs upf1 poly

upf1 poly

replicates

WT RNA 1

 WT RNA 2 vs WT RNA 1upf1 RNA 1 vs WT RNA 1upf1 RNA 2 vs WT RNA 1WT poly 1 vs WT RNA 1WT poly 2 vs WT RNA 1upf1 poly 1 vs WT RNA 1upf1 poly 2 vs WT RNA 1
WT RNA 1 vs WT RNA 2

WT RNA 2

 upf1 RNA 1 vs WT RNA 2upf1 RNA 2 vs WT RNA 2WT poly 1 vs WT RNA 2WT poly 2 vs WT RNA 2upf1 poly 1 vs WT RNA 2upf1 poly 2 vs WT RNA 2
WT RNA 1 vs upf1 RNA 1WT RNA 2 vs upf1 RNA 1

upf1 RNA 1

 upf1 RNA 2 vs upf1 RNA 1WT poly 1 vs upf1 RNA 1WT poly 2 vs upf1 RNA 1upf1 poly 1 vs upf1 RNA 1upf1 poly 2 vs upf1 RNA 1
WT RNA 1 vs upf1 RNA 2WT RNA 2 vs upf1 RNA 2upf1 RNA 1 vs upf1 RNA 2

upf1 RNA 2

 WT poly 1 vs upf1 RNA 2WT poly 2 vs upf1 RNA 2upf1 poly 1 vs upf1 RNA 2upf1 poly 2 vs upf1 RNA 2
WT RNA 1 vs WT poly 1WT RNA 2 vs WT poly 1upf1 RNA 1 vs WT poly 1upf1 RNA 2 vs WT poly 1

WT poly 1

 WT poly 2 vs WT poly 1upf1 poly 1 vs WT poly 1upf1 poly 2 vs WT poly 1
WT RNA 1 vs WT poly 2WT RNA 2 vs WT poly 2upf1 RNA 1 vs WT poly 2upf1 RNA 2 vs WT poly 2WT poly 1 vs WT poly 2

WT poly 2

 upf1 poly 1 vs WT poly 2upf1 poly 2 vs WT poly 2
WT RNA 1 vs upf1 poly 1WT RNA 2 vs upf1 poly 1upf1 RNA 1 vs upf1 poly 1upf1 RNA 2 vs upf1 poly 1WT poly 1 vs upf1 poly 1WT poly 2 vs upf1 poly 1

upf1 poly 1

 upf1 poly 2 vs upf1 poly 1
WT RNA 1 vs upf1 poly 2WT RNA 2 vs upf1 poly 2upf1 RNA 1 vs upf1 poly 2upf1 RNA 2 vs upf1 poly 2WT poly 1 vs upf1 poly 2WT poly 2 vs upf1 poly 2upf1 poly 1 vs upf1 poly 2

upf1 poly 2

juil. 31 2015 19:20:29
A tool by Marc Descrimes
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