Welcome to our genome browsers for visualization of NGS data

Genome browsers for visualization of NGS data from the manuscript entitled "Nonsense-Mediated Decay restricts lncRNAs levels in yeast unless blocked by dsRNA structure", by Wery et al. First select from the index below the type of data you want to visualize. Then, on the displayed homepage, enter the name of the gene or the coordinates of the region of interest you want to visualize. From the homage, you can also click on "generic analysis" to browse generic statistics (such as mapping stats) and figures relative to each dataset.

Annotation XUT

Show GFF file of XUT defined in the analysis.

Click here to download annotation.

Ribominus vs Terminator

Total RNA-Seq analysis in WT, xrn1 and dcp2-7 upon rRNA-depletion or Terminator digestion.

XUT lncRNAs landscape

Total RNA-Seq analysis in WT and xrn1 cells of haploid S288C, W303 and SK1, and diploid SK1 strains of S. cerevisiae.

Genome-wide mapping of capped RNA Transcription Start Sites

CAGE-Seq analysis in WT and dcp2-7 strains of S. cerevisiae.

XUTs sensitivity to decapping and NMD

RNA-Seq analysis of WT, xrn1, dcp2-7 and upf1 cells of S. cerevisiae (S288C).

Genome-wide mapping of double-stranded RNA

Small RNA-Seq in WT and xrn1 upon RNAi reconstitution in S. cerevisiae (W303).

Association of XUT lncRNAs to polysomes

Total RNA-Seq and polysome-Seq analysis in WT and upf1 strains of S. cerevisiae.
Original data from Smith et al. (2014) Cell Rep 7,1858-66.

Ribosome binding to XUT lncRNAs

Ribosome-profiling in WT and upf1 strains of S. cerevisiae.
Original data from Smith et al. (2014) Cell Rep 7,1858-66.

XUTs are primarily targeted by NMD

Total RNA-Seq analisys in WT, xrn1, upf1 and xrn1 upf1 strains of S. cerevisiae.
Original data from Malabat et al. (2015) Elife 4,e06722.

A tool by Marc Descrimes