General mapping stats for Total RNAseq analysis upon DSB induction in WT, xrn1, rrp6 and trf4 yeast strains.
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| case |
JKM139_1_T0 |
JKM139_1_T60 |
JKM139_1_T240 |
xrn1D_1_T0 |
rrp6D_1_T0 |
trf4D_1_T0 |
JKM139_2_T0 |
JKM139_2_T60 |
JKM139_2_T240 |
xrn1D_2_T0 |
rrp6D_2_T0 |
trf4D_2_T0 |
JKM139_T0 |
JKM139_T60 |
JKM139_T240 |
xrn1D_T0 |
rrp6D_T0 |
trf4D_T0 |
| total |
108512584 |
109043616 |
106942148 |
82059349 |
116072964 |
72866118 |
87266470 |
106034636 |
75876339 |
61216983 |
89501009 |
68946703 |
195779054 |
215078252 |
182818487 |
143276332 |
205573973 |
141812821 |
| duplicates |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| mapped |
108512584 |
109043616 |
106942148 |
82059349 |
116072964 |
72866118 |
87266470 |
106034636 |
75876339 |
61216983 |
89501009 |
68946703 |
195779054 |
215078252 |
182818487 |
143276332 |
205573973 |
141812821 |
| paired |
108512584 |
109043616 |
106942148 |
82059349 |
116072964 |
72866118 |
87266470 |
106034636 |
75876339 |
61216983 |
89501009 |
68946703 |
195779054 |
215078252 |
182818487 |
143276332 |
205573973 |
141812821 |
| read1 |
55394462 |
55652755 |
54584906 |
41704579 |
59646383 |
37294979 |
44720128 |
54109799 |
38704852 |
31050743 |
46152037 |
35226887 |
100114590 |
109762554 |
93289758 |
72755322 |
105798420 |
72521866 |
| read2 |
53118122 |
53390861 |
52357242 |
40354770 |
56426581 |
35571139 |
42546342 |
51924837 |
37171487 |
30166240 |
43348972 |
33719816 |
95664464 |
105315698 |
89528729 |
70521010 |
99775553 |
69290955 |
| properly paired |
171282 |
203598 |
209788 |
206822 |
240050 |
67727831 |
183172 |
227726 |
183688 |
110732 |
119850 |
64763273 |
354454 |
431324 |
393476 |
317554 |
359900 |
132491104 |
| itself and mate mapped |
102356132 |
102320748 |
99882590 |
78447176 |
108591938 |
67853786 |
81276036 |
98764194 |
71017916 |
58527104 |
83501570 |
64853406 |
183632168 |
201084942 |
170900506 |
136974280 |
192093508 |
132707192 |
| singletons |
6156452 |
6722868 |
7059558 |
3612173 |
7481026 |
5012332 |
5990434 |
7270442 |
4858423 |
2689879 |
5999439 |
4093297 |
12146886 |
13993310 |
11917981 |
6302052 |
13480465 |
9105629 |
| mate mapped on a different chr |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
| QC-failed |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
Download as tab file
nov. 16 2016 11:58:57
A tool by Marc Descrimes
v2.6